rs37485853 SNP Detail

Summary

• ID
  rs37485853
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:59034713 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTTTTAGTT ACATTTTTGT
  TGCTATGATA AAATCCCACA ATCAAAAGAG TTGCAGAGGG CTAGTTGTCC TTACTGACAG
  AGAAGGCAAA GCAGCAGGAG CAGAGAGCTA AGAGGTCCTA TCTCAGCTAC ATCACAGGAA
  GCAGAGAGGG GGAACTGGAA CTGGGGCAAG CCTACAAGCT CTCAGAGCAC CCTCTGCAGC
  R
  TACTTCCTCC TGTAGGGCAA AGAGCATCGC CGAAGAGCTG ATCACCAACA CCAACTAGGT
  GTTCAGATAC ATGAGACCAT ATCGCACATT TTTCATCCAA ACTAGCATAG TGTCTTAAAA
  GTGGTTTGTA ATTGAATTTG TAATAAACTG GGGTCTATGT CAGTTGGTTT TCTTCATCTA
  TATGACTATA TAGATTGGAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51261668	NES14277534	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs37485853					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51261668	NES14277534	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:59034713 () rs orientation: forward

Symbol	Name	Function Class
C2cd6	C2 calcium dependent domain containing 6	1562 bp downstream
Gm55816	predicted gene, 55816	1569 bp downstream
Rr411548	regulatory region 411548	1589 bp distal
Stradb	STE20-related kinase adaptor beta	mRNA-UTR