rs37488381 SNP Detail

Summary

• ID
  rs37488381
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:75713555 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCCCTGAGT ACGTGGGGGC
  TGTGCCTGAA TCGAGCCAAA GGCACTCAAC GGCAGCGGAA GAGAAACGCT TCCGAGCCAG
  CCGAACCTGG AAGTCGGCTG CCGCGACCAC TCGCTGGTAA GACCACCGTG CTATCATCTC
  CTGACAGCCC CTTGGAGGCC CGGCCCGCTC CCTCGCCCCG AAGCCTGGCG GGTCTGTCAC
  S
  CGAGGGCCGA ACCCGACTCG GCCGCTCCGA TGCCCACCCA TGACGACCAT CGGGAGACCG
  CAACCGACAG CACTCGCTTC GGAGAGGGTC TACGGCGATC ACAAGAAACA AGGGAACACA
  CGGCCCGACC GCAGCCAGCT CACCCTGCAG GAGGCGTATC TGCCGCCGCA GCTGCTCCTT
  TTCCTCCATC TCCGGAGTCC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51719862	NES14560194	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	C	G	G	G	C	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs37488381					SNP	G	G	G	G	G	G	C	G	G	G	C	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51719862	NES14560194	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:75713555 () rs orientation: forward

Symbol	Name	Function Class
Cpgi7192	CpG island 7192	within coordinates
Gm34851	predicted gene, 34851	1799 bp upstream
Gm62305	predicted gene, 62305	392 bp upstream
Rr390927	regulatory region 390927	1770 bp upstream
Rr404450	regulatory region 404450	175 bp upstream
Rr504550	regulatory region 504550	within coordinates
Rr504551	regulatory region 504551	199 bp proximal
Rr504552	regulatory region 504552	403 bp proximal
Tssr131679	transcription start site region 131679	378 bp upstream
Tssr134873	transcription start site region 134873	201 bp downstream
Tssr134874	transcription start site region 134874	231 bp downstream
Zc3h3	zinc finger CCCH type containing 3	within coordinates