rs37488815 SNP Detail

Summary

• ID
  rs37488815
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:5845610 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTTAGGAAC AGAGGAGCAA
  TGCACACCAC CTCTTTTCGA CACCATCTTT TCCCAACTTC CTCATAGACA ATCCAGAATG
  TTTTCTCAGG GAGGAGAGCC TGAACAGCAG GGAAAGGCCT TGTGTTCCTG AGGTGCAAGA
  GTGGCCACCT AGGACCCAAG CCCAACTTTA GAGCCATCTG CATGAAAGAG CCATGCAGCC
  Y
  AAGGAAACAG GGAAGGCCTC ACTAATCGGA GAAGCTGAGG TAGATCAGAC ATTTGGTCTC
  TTTAGGCTTA AAATAAGCCT GTGTTTTATG CACAAAGAAG CACACAATGA GAGATATTTA
  GTTTTTATTT CATAAAATCA AAGTATTCAA TAAATAGTAG GAGGTGTGTC GACTCAGAGG
  TAATAAGACG AATTGGGCAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50577516	NES13649151	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs37488815					SNP	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50577516	NES13649151	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:5845610 () rs orientation: forward

Symbol	Name	Function Class
Malat1	metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA)	108 bp downstream
Mascrna	Malat1-associated small cytoplasmic RNA	342 bp downstream
Rr543159	regulatory region 543159	1937 bp distal
Rr543160	regulatory region 543160	1164 bp distal
Rr543161	regulatory region 543161	1872 bp proximal
Tssr5415	transcription start site region 5415	1252 bp downstream
Tssr5416	transcription start site region 5416	1728 bp downstream
Tssr157645	transcription start site region 157645	771 bp downstream
Tssr157646	transcription start site region 157646	801 bp downstream
Tssr157647	transcription start site region 157647	963 bp downstream
Tssr157648	transcription start site region 157648	1129 bp downstream
Tssr157649	transcription start site region 157649	1229 bp downstream
Tssr157650	transcription start site region 157650	1288 bp downstream
Tssr157651	transcription start site region 157651	1342 bp downstream
Tssr157652	transcription start site region 157652	1479 bp downstream
Tssr157653	transcription start site region 157653	1596 bp downstream
Tssr157654	transcription start site region 157654	1639 bp downstream
Tssr157655	transcription start site region 157655	1676 bp downstream
Tssr157656	transcription start site region 157656	1706 bp downstream
Tssr157657	transcription start site region 157657	1828 bp downstream
Tssr157658	transcription start site region 157658	1880 bp downstream
Tssr157659	transcription start site region 157659	1983 bp downstream