rs37490300 SNP Detail

Summary

• ID
  rs37490300
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:91734339 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGATGCTTG TCTTTTCACG
  TCTGCATGTA AGTAACATTT TGAAGTAGAG CTCGTGACTC TGGTCCGCCT GCCTCCTGGA
  GAGAGGGCTA AGCTGTTCAC CAACCAGCCC TTGCCTGGAA CAGGCCAGAT CCTGTCCTGC
  CTGTCAGATG GAGACAGGAA GCAAGGGACA TTGCCTGGTT TAGATGAGGA CATTAGGTGG
  R
  CCCAGGAGAC CCTGGGAGAT GTTATTTGGT CCTAAGAGTG ATGTGACCTC CCAAATGGAG
  GGTCCCTGCT GGGCACTGTG GGCAGCCCCA GAGGGCCCTG ATCCAAGGCA CTTATGTAAT
  CAGGAGAATA GGCCTAGTGT GGGGACTTAC ACTGTGAGCT AAGTGGAACT GGACATTTGA
  GTCATTTGTA GCTTCAGGTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51366825	NES13739726	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs37490300					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51366825	NES13739726	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:91734339 () rs orientation: forward

Symbol	Name	Function Class
Rr137561	regulatory region 137561	739 bp distal
Rr141761	regulatory region 141761	662 bp proximal
Rr379752	regulatory region 379752	within coordinates
Slc6a6	solute carrier family 6 (neurotransmitter transporter, taurine), member 6	within coordinates
Tssr1939	transcription start site region 1939	236 bp downstream
Tssr57748	transcription start site region 57748	1341 bp downstream
Tssr57749	transcription start site region 57749	1201 bp downstream
Tssr57750	transcription start site region 57750	838 bp downstream
Tssr57751	transcription start site region 57751	734 bp downstream
Tssr57752	transcription start site region 57752	364 bp downstream
Tssr57753	transcription start site region 57753	461 bp upstream
Tssr57754	transcription start site region 57754	560 bp upstream
Tssr57755	transcription start site region 57755	651 bp upstream
Tssr57756	transcription start site region 57756	684 bp upstream
Tssr57757	transcription start site region 57757	721 bp upstream
Tssr57758	transcription start site region 57758	752 bp upstream
Tssr57759	transcription start site region 57759	977 bp upstream
Tssr57760	transcription start site region 57760	1033 bp upstream
Tssr57761	transcription start site region 57761	1050 bp upstream
Tssr57762	transcription start site region 57762	1078 bp upstream
Tssr57763	transcription start site region 57763	1105 bp upstream
Tssr57764	transcription start site region 57764	1130 bp upstream
Tssr57765	transcription start site region 57765	1170 bp upstream
Tssr57766	transcription start site region 57766	1192 bp upstream
Tssr57767	transcription start site region 57767	1259 bp upstream
Tssr57768	transcription start site region 57768	1282 bp upstream
Tssr57769	transcription start site region 57769	1474 bp upstream
Tssr57770	transcription start site region 57770	1581 bp upstream
Tssr62095	transcription start site region 62095	968 bp downstream
Tssr62096	transcription start site region 62096	1243 bp downstream
Tssr62097	transcription start site region 62097	1458 bp downstream