rs37490396 SNP Detail

Summary

• ID
  rs37490396
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:47774736 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCATGCACC CCCTTCTCCA
  AGCCTCAGAC ACGACCTTCC TTCTGTCTGA AAGGTCCTTC TCGGCTCCAC CTGGTCCCAT
  TCCACTTCCT CTGTCCACAC TCCTCCCTCA GGGTGCACAT GCTATTTCCT GGCTCCAAAT
  CTGACCCATC CTTCAAAGAC TAGTGTGAAT CTTGCTTCTT CTACAACACT TCTCTAGTAT
  Y
  CTGTTACCAT GAACTGTCTC TAATTTTTTT TCTTAATTTC TATGTCTAAT ATACCAGCTA
  CACAGAGAAA AGACTAGAGA GAAGATAAAA AATAATTTAG AGAAGCCTAG GGTAGAGTCT
  CCCCCTCCTC CCAGGGATCT GAAGATGGGT ACCAGTGGAT GTTGAGCATC CAAGGGTAGC
  AGGCAAGCCA CTAGGCTGGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50857488	NES13520336	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs37490396					SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50857488	NES13520336	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:47774736 () rs orientation: forward

Symbol	Name	Function Class
Cfap43	cilia and flagella associated protein 43	within coordinates
Cpgi11037	CpG island 11037	458 bp proximal
Tssr159755	transcription start site region 159755	810 bp downstream