rs37492075 SNP Detail

Summary

• ID
  rs37492075
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:55375916 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCTGAAGGG TTTTGTGTTC
  CTTTTTTTTC AGGGAAATGT ACACTTGACA AAACTATTGA CTTTATGACT TCAGAAGTCT
  TCTCCCCTGA CCGTCTTCTC AGAAGTGTTC CTAGTTGTTG TGGGGGCACT GTTTCTTGTT
  GACACTGAGA GGCAGTTAAT CTTTTTAAAG CCAAAAAGCG GAGGAATAAC CCAGGCGTAC
  Y
  CTAAAACTGT ACAGAGCTGT GCTGTTCTGT GGTCTTTTAG CTTCACGTTT CTTTTATTTG
  TGTTGGCTTC TCAGTGAGGT TAGTATGACA TCATTTTTTT TTCCTGATCC TGATTTATTT
  TACTGAAAAC TCCCTCCACC TGCTAGATCC CAGGGATCCC TAGAAAAACA GCACAGGGAC
  ACACACACAC ACACACACAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss51220892	NES14295778	PERLEGEN	MM_PANEL2	f	SNP	C	C	T	C	C	C	C	C	C	C		C	C	T	C		C
ss325853482	CHEV_19_55461974	CHEVERUD	SCREENING_POP	f	SNP											T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs37492075					SNP	C	C	T	C	C	C	C	C	C	C	T	C	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51220892	NES14295778	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:55375916 () rs orientation: forward

Symbol	Name	Function Class
D19Mit35	DNA segment, Chr 19, Massachusetts Institute of Technology 35	134 bp proximal
Vti1a	vesicle transport through interaction with t-SNAREs 1A	within coordinates