rs37492282 SNP Detail

Summary

• ID
  rs37492282
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:135388959 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGCTAGGGA CATCAGCGGG
  GGTAAAGTCC CTCCCTGTTT TGTGTGGTAG GTGAGTGGAC CGGCTTAATG GGAGGACAAC
  AGCCTCTGGG ATCAGTCTTA TGGCTTTTGG TTTAACGTCA CTACATAGGG CCAGCTCTTG
  TGGCACAAAA TGACCTTCCA GTAGGTTCTG TTTGGTTTAT CTCTTCTGCC TCTGCACCCT
  M
  ACCCTATTCT TATCTCACCC TGGGTTTGGA ACTAATGCCT CTCTCTGGAA GGGCTGGGGG
  TGGGGGCATG GGAGTGAGGG ATGCCAGTAG CCATGCAAAC CACTTCAGGG CATTCCCCAT
  TTTGGCCACT AGGGGGCAGG GCTACATTGG AAAGGGTGCT GGATCCTGTG GGAACTCTGG
  ATCTCTGAAG GGGGGGTGGG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51379250	NES14465426	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	C	A	A	A	C	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs37492282					SNP	A	A	A	A	A	A	C	A	A	A	C	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51379250	NES14465426	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:135388959 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Nav1	neuron navigator 1			Intron
				Noncoding-Transcript-Variant
Rr419148	regulatory region 419148			496 bp distal
Rr419149	regulatory region 419149			within coordinates
Rr419150	regulatory region 419150			122 bp proximal
Rr419151	regulatory region 419151			1126 bp proximal