rs37493581 SNP Detail

Summary

• ID
  rs37493581
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:4841908 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTTATAAAC TCAGCTGCCA
  AGACTTACTA TATGTCCGCT GGCCTTCACC CTGTGCCCAT AGTATTCAGG GGGCCCAATG
  GCGCCTCAGC AGGTGTAGCT GCTCAGCACT CGCAATGCTT TGCTGCATGG TATGGGCACT
  GCCCAGGTTT AAAAGTGGTC AGCCCCTGGA ATTCCGAGGA TGCAAAAGGA CTTATTAAAT
  Y
  GGCTATTCGT GATAATAGCC CAGTGGTAAT GCTAGAAAAT GAACTGATGT ATGGAGTTGC
  ATTTGAAGTT CCTGCAGAAG CTCAGTCAAA AGATTTCCTG ATTCCTATTG GAAAAGCCAA
  AATTGAAAGG CAAGGGACCC ACATCACTGT AGTTGCCCAT TCAAGCCCAG TGGGCCACTG
  CCTAGAAGCT GCAGCTGTAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss50908898	NES13484773	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs37493581					SNP	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50908898	NES13484773	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:4841908 () rs orientation: forward

Symbol	Name	Function Class
Gm6123	predicted gene 6123	within coordinates
Mrpl15	mitochondrial ribosomal protein L15	1524 bp downstream
Rr407423	regulatory region 407423	1355 bp distal
Rr407424	regulatory region 407424	1609 bp distal
Tssr5799	transcription start site region 5799	563 bp downstream