rs37493868 SNP Detail

Summary

• ID
  rs37493868
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:67061005 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGGTCCATGG GGTAGGAATA TGTGGTGTAC AGTAACTACA
  GCAGAGAGGA GACAGACCCA CCTTCTTCCC CTAATGGGAC AACCTATGCG GTTTGCCTTC
  Y
  ATCTCCTCTG GGAAGGTCTC CTTGCTGTCT CCAGCCTGGA CAGAGCTACT CTGGAACTTA
  CAAATGATTA ATAGTCCAGA TCACAAATAT TGCTGTGGT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss50729636	NES14251484	PERLEGEN	MM_PANEL2	f	SNP	C		T	C	C	T	C	C		C	T	C	C		C
ss136578002	ENSMUSSNP315322	ENSEMBL	ENSEMBL_Sanger	f	SNP		C				T
ss322989803	CHEV_9_67001530	CHEVERUD	SCREENING_POP	f	SNP									T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs37493868					SNP	C	C	T	C	C	T	C	C	T	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50729636	NES14251484	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:67061005 () rs orientation: forward

Symbol	Name	Function Class
D9Dcr5	DNA segment, Chr 9, Derry C. Roopenian 5	1842 bp proximal
D9Mit302	DNA Segment, Chr 9, Massachusetts Institute of Technology 302	1839 bp proximal
D9Mit302.1	DNA segment, Chr 9, Massachusetts Institute of Technology 302.1	1618 bp proximal
Gm19299	predicted gene, 19299	within coordinates
Gm68695	predicted gene, 68695	within coordinates
Rr681887	regulatory region 681887	33 bp distal
Rr681888	regulatory region 681888	381 bp proximal
Tssr90326	transcription start site region 90326	1496 bp downstream
Tssr90327	transcription start site region 90327	1523 bp downstream