rs37493875 SNP Detail

Summary

• ID
  rs37493875
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr19:11797685 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGAAG GAGGATGGAT TCATTTTGAA
  R
  CAAGAACAAA GGATTCCAGT TAAGA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50615988	NES13627336	PERLEGEN	MM_PANEL2	f	SNP	G	A	G	A	G	G	G	G	A	A	A	A	G	A	G
ss146053669	ENSMUSSNP2340723	ENSEMBL	ENSEMBL_Sanger	f	SNP		A						G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs37493875					SNP	G	A	G	A	G	G	G	G	A	A	A	A	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50615988	NES13627336	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:11797685 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi10634	CpG island 10634			925 bp distal
Cpgi10635	CpG island 10635			177 bp distal
Gm41810	predicted gene, 41810			within coordinates
Gm59062	predicted gene, 59062			within coordinates
Rr544383	regulatory region 544383			1611 bp distal
Rr544384	regulatory region 544384			889 bp distal
Rr544385	regulatory region 544385			263 bp distal
Rr544386	regulatory region 544386			112 bp proximal
Rr544387	regulatory region 544387			134 bp proximal
Stx3	syntaxin 3			mRNA-UTR
				Noncoding-Transcript-Variant
Tssr155285	transcription start site region 155285			1745 bp downstream
Tssr155286	transcription start site region 155286			1279 bp downstream
Tssr155287	transcription start site region 155287			1160 bp upstream
Tssr155288	transcription start site region 155288			1501 bp upstream
Tssr158398	transcription start site region 158398			1879 bp upstream
Tssr158399	transcription start site region 158399			1438 bp upstream
Tssr158400	transcription start site region 158400			1356 bp upstream