rs37493932 SNP Detail

Summary

• ID
  rs37493932
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:5846973 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATGATACCA CTTTGGTCTC
  GATACAATAC TGCTTGCTTG ATTCTTGCCA CACAGGAAGG CTCCGCTGTC CTACATTAAG
  CCTTCAGTGC CTTTAGTGAG GGGTACCTGA AAAATCTTAA AAAAAGGCTT AGCGCCCACC
  TCACCCCTCC ACCCCAAGGC CAACATTACA TCACATGCTA GCTGCTCCAG CATGAAGCTG
  R
  AGAGGATTCA ACACTAGATT ACCAGTAGCT AATCTTAAAC AAGAAAAGGC TCGTTCACCT
  GTTGTCCTCA TTTTGTCCAC TGGTGAATTT CAATTCAACT GGAAGCTCCT TCTACAGTCT
  GAAGTACATC TGAAAGAACT AGGGCTTCCC AATCCCCACA CTGAAAATGG CATGTCTGCT
  TCACTTATCG ATTTAAAGTA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	BALB/cByJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss50577502	NES13649158	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	A	G	A	G
SNP Consensus Information
SNP					Consensus Type	AKR/J	BALB/cByJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs37493932					SNP	G	G	G	G	A	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50577502	NES13649158	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:5846973 () rs orientation: forward

Symbol	Name	Function Class
Malat1	metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA)	within coordinates
Mascrna	Malat1-associated small cytoplasmic RNA	964 bp upstream
Rr543161	regulatory region 543161	509 bp proximal
Rr543162	regulatory region 543162	1615 bp proximal
Tssr5415	transcription start site region 5415	79 bp upstream
Tssr5416	transcription start site region 5416	365 bp downstream
Tssr157645	transcription start site region 157645	564 bp upstream
Tssr157646	transcription start site region 157646	462 bp upstream
Tssr157647	transcription start site region 157647	375 bp upstream
Tssr157648	transcription start site region 157648	208 bp upstream
Tssr157649	transcription start site region 157649	116 bp upstream
Tssr157650	transcription start site region 157650	51 bp upstream
Tssr157651	transcription start site region 157651	within coordinates
Tssr157652	transcription start site region 157652	116 bp downstream
Tssr157653	transcription start site region 157653	233 bp downstream
Tssr157654	transcription start site region 157654	276 bp downstream
Tssr157655	transcription start site region 157655	313 bp downstream
Tssr157656	transcription start site region 157656	343 bp downstream
Tssr157657	transcription start site region 157657	465 bp downstream
Tssr157658	transcription start site region 157658	517 bp downstream
Tssr157659	transcription start site region 157659	620 bp downstream
Tssr157660	transcription start site region 157660	773 bp downstream
Tssr157661	transcription start site region 157661	794 bp downstream
Tssr157662	transcription start site region 157662	899 bp downstream
Tssr157663	transcription start site region 157663	958 bp downstream
Tssr157664	transcription start site region 157664	1080 bp downstream
Tssr157665	transcription start site region 157665	1087 bp downstream
Tssr157666	transcription start site region 157666	1112 bp downstream
Tssr157667	transcription start site region 157667	1365 bp downstream
Tssr157668	transcription start site region 157668	1412 bp downstream
Tssr157669	transcription start site region 157669	1427 bp downstream
Tssr157670	transcription start site region 157670	1447 bp downstream
Tssr157671	transcription start site region 157671	1464 bp downstream
Tssr157672	transcription start site region 157672	1513 bp downstream
Tssr157673	transcription start site region 157673	1530 bp downstream
Tssr157674	transcription start site region 157674	1560 bp downstream
Tssr157675	transcription start site region 157675	1579 bp downstream
Tssr157676	transcription start site region 157676	1590 bp downstream
Tssr157677	transcription start site region 157677	1612 bp downstream
Tssr157678	transcription start site region 157678	1624 bp downstream
Tssr157679	transcription start site region 157679	1661 bp downstream
Tssr157680	transcription start site region 157680	1716 bp downstream
Tssr157681	transcription start site region 157681	1745 bp downstream
Tssr157682	transcription start site region 157682	1763 bp downstream
Tssr157683	transcription start site region 157683	1789 bp downstream
Tssr157684	transcription start site region 157684	1805 bp downstream
Tssr157685	transcription start site region 157685	1815 bp downstream
Tssr157686	transcription start site region 157686	1830 bp downstream
Tssr157687	transcription start site region 157687	1899 bp downstream
Tssr157688	transcription start site region 157688	1949 bp downstream
Tssr157689	transcription start site region 157689	1980 bp downstream