rs37497801 SNP Detail

Summary

• ID
  rs37497801
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:60659193 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAGGCCTTT GTACAAAACA
  ACAAACAGCA CCCTTACTTT CTGGATGATA CAAAGAGCAC TGAGCCTGTC TGGACTTGGA
  CTTGGACTTG CGCAGAGCAC CCCAGGAGGG CCACAGCAGC CAAGGCTCCA GGAAACGAGG
  AGTGTGGGAC TGAAACCTGA GGAGCGCACG CGCACTTAGA CCGCAACGTC CTGCTGGGTC
  S
  GTTTAGCTTA CGTCAACGTC TACGTAAAAG GCGTAGGGGA CGCGGGGAGG GAAGCGCCGG
  GCTGTGTCAC GTGACGGGTG CGCCGGGCGT TGGCTCCTCC CTCACCAAGA TGGCGTCCCT
  GCTGCAGTCG GAGCGGGTTC TCTATCTCGT CCAAGGAGAA AAGAAGGTTC GGGCTCCGCT
  CTCACAGCTC TACTTCTGCC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50418806	NES13463004	PERLEGEN	MM_PANEL2	f	SNP	C		G	G	G	G	G	G	G	G	G	G	G	G	G	G
ss147246197	ENSMUSSNP5306600	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	G						G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs37497801					SNP	C	C	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50418806	NES13463004	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:60659193 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10090	CpG island 10090	within coordinates
Dctn4	dynactin 4	64 bp upstream
Gm58902	predicted gene, 58902	within coordinates
Rr352957	regulatory region 352957	within coordinates
Tssr151313	transcription start site region 151313	73 bp upstream
Tssr153448	transcription start site region 153448	135 bp upstream
Tssr153449	transcription start site region 153449	42 bp upstream
Tssr153450	transcription start site region 153450	18 bp upstream