rs37498988 SNP Detail

Summary

• ID
  rs37498988
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:145881300 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATTAT CGTGATTGGA GTTTTCTAAG
  Y
  CAAATGATTT TAAAAATAAC CTCTC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss51464086	NES13986192	PERLEGEN	MM_PANEL2	f	SNP	T	T	C	T	T	C	C	C	T		C	C	C		T
ss133984558	ENSMUSSNP6428500	ENSEMBL	ENSEMBL_Sanger	f	SNP		T					C
ss322075169	CHEV_6_145884094	CHEVERUD	SCREENING_POP	f	SNP										C				T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs37498988					SNP	T	T	C	T	T	C	C	C	T	C	C	C	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51464086	NES13986192	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:145881300 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18164	CpG island 18164	1133 bp distal
D6Mit200	DNA segment, Chr 6, Massachusetts Institute of Technology 200	130 bp distal
Rr641247	regulatory region 641247	1442 bp distal
Sspn	sarcospan	within coordinates
Tssr59564	transcription start site region 59564	1438 bp downstream
Tssr59565	transcription start site region 59565	1413 bp downstream