rs37500465 SNP Detail

Summary

• ID
  rs37500465
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:114268343 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACGTGAGTGT GGGAGGTAAA
  AAGTACAAGG GGGTGTATGG CTCAGTGGTC AAGCGGTTGC TCAGGATGCA CAAAGGCCCT
  GAGTTCAATC CCCAAAGGGG ACTGAAAAGG AGGGAGGGAG GTGTATCTGG GGAAGTGGAA
  CATTTCGGGG TTAAAGGCCT TCAATCTTTA CATCAGTAAG ACTTGGAGAA AGCCCCGCTT
  Y
  AGAGCTAGGA CAGGTAGGTA GGTAAGCAGC AGGCTCCCCC TACCTCCTAA GCCCCACCCA
  CCCGGGGGCG GGGCCTCAGC CCCTCCCACA CATGCGCGCT GGGCCTCACC GACCCCTGCC
  CAGCCAGCCT CCCCGCCCCC AACGGGAGCC CGCGCAGGTG GCAGCGCGCC TACCGTGAGC
  ACGGCTGCAG GAGTCCCGGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51798735	NES14715522	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs37500465					SNP	T	T	T	T	T	T	T	T	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51798735	NES14715522	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:114268343 () rs orientation: forward

Symbol	Name	Function Class
Cpgi16309	CpG island 16309	1884 bp distal
Cpgi16310	CpG island 16310	within coordinates
Gm73237	predicted gene, 73237	within coordinates
Rr378486	regulatory region 378486	1535 bp downstream
Tssr48056	transcription start site region 48056	82 bp upstream
Tssr48057	transcription start site region 48057	106 bp upstream
Tssr48058	transcription start site region 48058	875 bp upstream
Tssr48059	transcription start site region 48059	902 bp upstream
Tssr48060	transcription start site region 48060	1928 bp upstream
Tssr52695	transcription start site region 52695	423 bp downstream
Tssr52696	transcription start site region 52696	1304 bp downstream
Ung	uracil DNA glycosylase	104 bp upstream