rs37500846 SNP Detail

Summary

• ID
  rs37500846
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:5899439 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCTTCCTAT AGTCCTTGAA
  TTGCATGTCC TTTCCCAGCC TCCCCCCTAG GAACCAGTTC CTGTAGGGCC ATCTGCTGGT
  GTCGTATTTC CCTTCCCCCT CCTCTGGGAC CAGCACACAG GTCACTCTTC AATGAGAACA
  TCCTCAGGCT AGGACCTGCT TGCCACCACA GGGACCCCAG CTTGCTCCAC ACGGGCTCAC
  Y
  AGGCTGTCCT TGAGCCTTCT ACAACCTGGC TTTGGTCTGA GTGCCATCCT TGAGCAATCA
  CAGAGGTTGG CCCGGCTTCT GCCAGCTGCA CAGTGGGTGG CGTGACACCC CCTTGCTGAT
  CTTGACCTTG TATAGGAGGG CCGTGCTCAT TGGCTTAGGG TGTCTGTGAC CATTACTGAA
  ACCACCCAAA TGCCTGTGAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	CAST/EiJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	WSB/EiJ
ss50577062	NES13648183	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	CAST/EiJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	WSB/EiJ
rs37500846					SNP	T	T	T	T	T	T	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50577062	NES13648183	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:5899439 () rs orientation: forward

Symbol	Name	Function Class
Frmd8	FERM domain containing 8	1563 bp downstream
Frmd8os	FERM domain containing 8, opposite strand	within coordinates
Gm59609	predicted gene, 59609	997 bp upstream
Gm59610	predicted gene, 59610	168 bp upstream
Rr370436	regulatory region 370436	within coordinates
Tssr154520	transcription start site region 154520	889 bp downstream
Tssr154521	transcription start site region 154521	743 bp downstream
Tssr157783	transcription start site region 157783	1287 bp upstream
Tssr157784	transcription start site region 157784	532 bp downstream
Tssr157785	transcription start site region 157785	593 bp downstream