rs37501011 SNP Detail

Summary

• ID
  rs37501011
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr10:77388516 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTGGATCCT TCATGGCCTG
  AGGGACAGTC ACACACACCT GCCCGGAGCC ACTGCCCAGG GCTTCCTTTG GAATGTGTAG
  GGCATATGCA GCCCAGCCTG TGGACTGATC TTAATGGACA GTGGGGGCAT GAGGGATTCT
  CTCTGCTCCC AGGGGCTGCT CAGCATAAGA CCCTGAGCCA GAATGAGATG TGTACATTTG
  Y
  CATGTGACAT GAAGCATGGA ACACGCTGGC TGTAATAAGT TTGTAAAGTC TGATGGCTCA
  TTCTTCAGAG TCAGAGAACC ACAGATCTCA GCCACCCCAG ACACTGTAGT GCCAGGGAAA
  TGTTAGTGGT CCCCCCAAAA ACAGAGAGAA GCCAATCTGA TGCAATTCAC AGCAAGGTCT
  CTATTCTATC TAAGCTAGCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss50884817	NES14161789	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs37501011					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50884817	NES14161789	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:77388516 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Itgb2	integrin beta 2			Intron
				Noncoding-Transcript-Variant
Tssr94244	transcription start site region 94244			1766 bp downstream
Tssr94245	transcription start site region 94245			1173 bp upstream
Tssr94246	transcription start site region 94246			1351 bp upstream