rs37501682 SNP Detail

Summary

• ID
  rs37501682
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:8441649 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCAGAGCCA CGTCATCCTG
  ATCAAAAAAG AAGCCCAGAG AGAGGTAGGT GGAGGAGGCC GGCTGGTGCA GTTGAGCAGG
  CGGTTCACGG CAGCTTCCAT CTCGGTGGAA TCATTCTGAC GAATCTGAGA GGTCATGGCT
  GATCCGGAGT ATGAGCTAAC CATGAATAGA CGGTGCAGAC TGGTCCTAGG AGCCAAAGGC
  R
  GCAAGGAGAT GATGGTTCCA GAGGCTGCGA CTGGAGAGAC TTGTAAAGCG GCTGGAAGCT
  AGTACAGTGG GAGTCCCTGG GTCTGTTTCG TCCAAACACT GTTGAAGCAA GGCACAGATC
  CATGGGACCT CCAAGGTGCT GCTCCTAACG TGACTTTAAG AAGAATTCCT GGGGCTGGAG
  CAATGGCTCA GGGGTAAGTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
ss51776910	NES14544643	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
rs37501682					SNP	A	A	A	A	A	A	A	A	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51776910	NES14544643	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:8441649 () rs orientation: forward

Symbol	Name	Function Class
Gm7541	predicted gene 7541	65 bp upstream
Gm49549	predicted gene, 49549	1424 bp downstream
Gm55031	predicted gene, 55031	515 bp upstream
Tssr139859	transcription start site region 139859	142 bp downstream