rs37503910 SNP Detail

Summary

• ID
  rs37503910
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:132286249 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGGGGAGGC TATAGCTGTG
  AGGTCCTTAC CAGCTGTAAG GAGAGGATGA CTCCACACTC CAGTGAGAGC TGGGCAGACC
  TTTTCTCTTT ACAAATTATC CAACCTCATG CATCTTGCTA CTGTACCAAG AAGGTGGTAG
  CACATGGCCC CTCTTCACAG CCAAGGGCAC AGCTAGGACT GGGAACAGAA CTCTAATGAA
  R
  ACTGTTTGAG GAGGATCTAA GGAAATGGAA GTCTTGCTTA CTGATCCCAG CTCCATATTG
  AGGCAAGGAA ATGCCTGGAA ATAACAATTA TTCATTTGTA AACCTGTCAC CAAAAAGATG
  TGGCAAATGA AGGTGGCCTT TACCCACTGG TTTGCCTTTA TATAGTGCAC ACACTTGGGC
  GAAGACTTAC GTTGCTCTTA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51373310	NES14476094	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs37503910					SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51373310	NES14476094	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:132286249 () rs orientation: forward

Symbol	Name	Function Class
Cpgi727	CpG island 727	1985 bp proximal
Tmcc2	transmembrane and coiled-coil domains 2	within coordinates
Tssr13633	transcription start site region 13633	1009 bp upstream
Tssr13634	transcription start site region 13634	956 bp upstream
Tssr13635	transcription start site region 13635	851 bp upstream
Tssr13636	transcription start site region 13636	255 bp upstream
Tssr13637	transcription start site region 13637	389 bp downstream
Tssr13638	transcription start site region 13638	1804 bp downstream