rs37505649 SNP Detail

Summary

• ID
  rs37505649
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:131914746 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGCCTTCTC CTTCTAGGTC
  CAGGCCTGTC CCCACTCCAG TTCCGTCATC CTTCCTTGCA CATATAAATA ACCAAAATCA
  TGGTGGGGGT TCCATTGCCC TTCCCCGGAC CACTGAAAGA GGCAAAAGGA TAGAAACATC
  TGTGGGACTT GCCTAGCGCA GGGCTAGCTG TGAATGTATA GGGACGCAGC TAATGACAGC
  K
  ATTATCAAAA ACAGCCTTGC TGCTCAGTTC TCGTATTTTA GAAAAACAGT CCCTATTGGC
  CCACATCGGC ACAAGCCCTT TTCTTCCTAG ATATTAGGCT GGATAAGCTA AGCATGCACC
  CGCCACCTCC ATGTTCACCT CGGGATGTAG AGAGCCAGAT CTTCATGTGT ATCATTAGGT
  CCTAGTGTTT CAGAGGAGAA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51931025	NES14953378	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	G	T	T	T	T	G	G	T	T	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs37505649					SNP	T	T	T	T	G	T	T	T	T	G	G	T	T	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51931025	NES14953378	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:131914746 () rs orientation: forward

Symbol	Name	Function Class
Chst15	carbohydrate sulfotransferase 15	within coordinates
Gm19463	predicted gene, 19463	1895 bp downstream
Gm44891	predicted gene 44891	within coordinates
Gm71837	predicted gene, 71837	within coordinates
Rr656553	regulatory region 656553	183 bp distal
Tssr75193	transcription start site region 75193	1391 bp upstream