rs37506098 SNP Detail

Summary

• ID
  rs37506098
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:113366886 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCTTTTTTTT TTTTTTTTTT TAAACAAGCA TTAGCTGGCT
  GTCCCCAGGC AGGACCCTGG GGAAAATTAC TATATTTTAC CTAGGGTCTC CTCCAGAGCC
  M
  TAAGTCTGCT TGGTGCCTGA TGGGGAAGAG CAGATCACTG GAGAACTTGG CGGAAGAACT
  GGGCTTCCAG CTGCTGCCTT CCTGGTTCCC CCAGAGAGT                       
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss50460399	NES14119734	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	A	A	A	C	C		A	C	C	A		C
ss322424338	CHEV_7_120911163	CHEVERUD	SCREENING_POP	f	SNP											C					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs37506098					SNP	C	C	C	C	C	A	A	A	C	C	C	A	C	C	A	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50460399	NES14119734	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:113366886 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19594	CpG island 19594	626 bp distal
Rr653859	regulatory region 653859	1465 bp distal
Rr653860	regulatory region 653860	40 bp proximal
Rr653861	regulatory region 653861	1003 bp proximal
Rr653862	regulatory region 653862	1626 bp proximal
Spon1	spondin 1, (f-spondin) extracellular matrix protein	within coordinates
Tssr68625	transcription start site region 68625	1854 bp downstream
Tssr68626	transcription start site region 68626	1802 bp downstream
Tssr68627	transcription start site region 68627	1738 bp downstream
Tssr68628	transcription start site region 68628	1610 bp downstream
Tssr68629	transcription start site region 68629	1586 bp downstream
Tssr68630	transcription start site region 68630	1551 bp downstream
Tssr68631	transcription start site region 68631	1450 bp downstream
Tssr68632	transcription start site region 68632	1394 bp downstream