rs37509166 SNP Detail

Summary

• ID
  rs37509166
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:20369061 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ACTGGCCGTG GGGAGGGAGT GTGAGCACGT GTGAACTCCT
  GGGGAATTTC TCCTTCCTCA TGATATCCTG GTTGCTATAG TGCAGATCTA TTTGTAACAC
  R
  CAGAAAATGC TTTAAATAAA AGCTACTTCC TGACCATGAC TTCCTGGGCA ATGTGTTCTT
  CCGGAGACTG TTGAACGCCA AAGTTTACAA GCAGTCTGA                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss51076125	NES14368650	PERLEGEN	MM_PANEL2	f	SNP	A	A	G	A	G	A	G	A		A	G	A	A		A
ss324281239	CHEV_13_20276760	CHEVERUD	SCREENING_POP	f	SNP									G					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs37509166					SNP	A	A	G	A	G	A	G	A	G	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51076125	NES14368650	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:20369061 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5309	CpG island 5309	359 bp proximal
Elmo1	engulfment and cell motility 1	within coordinates
Rr270987	regulatory region 270987	661 bp distal
Rr270988	regulatory region 270988	within coordinates
Rr270989	regulatory region 270989	740 bp proximal
Rr281054	regulatory region 281054	within coordinates
Rr403595	regulatory region 403595	172 bp upstream
Tssr118580	transcription start site region 118580	49 bp upstream
Tssr118581	transcription start site region 118581	107 bp upstream
Tssr118582	transcription start site region 118582	396 bp upstream
Tssr118583	transcription start site region 118583	431 bp upstream
Tssr118584	transcription start site region 118584	512 bp upstream
Tssr118585	transcription start site region 118585	525 bp upstream