rs37513341 SNP Detail

Summary

• ID
  rs37513341
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  126
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:149150127 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTCCACTGTG CTATATACAT GGCAGGGTTT AAAGAGCCCC
  TTTACAGTAA AGTTTTCTAA AATACGATTT AAATTTAAAA ACAATACCTA CCAGCACGTC
  Y
  AACAACAGTA ACGGAATCCA ACTAATTGCA ACACTTCTGC ATAGCCTAGT AATTTGTGAA
  TTGTGCAGAA TAAATCTATT TGACAGGCCA GTTAGCAATA                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51052132	NES13892906	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs37513341					SNP	T	T	T	T	T	T	T	T	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51052132	NES13892906	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:149150127 () rs orientation: forward

Symbol	Name	Function Class
A630039O03Rik	RIKEN cDNA A630039O03 gene	within coordinates
Gm30382	predicted gene, 30382	within coordinates
Rr398127	regulatory region 398127	1033 bp upstream
Rr587324	regulatory region 587324	293 bp proximal
Rr587325	regulatory region 587325	692 bp proximal
Tssr36100	transcription start site region 36100	696 bp downstream
Tssr36101	transcription start site region 36101	763 bp downstream
Tssr36102	transcription start site region 36102	777 bp downstream
Tssr36103	transcription start site region 36103	861 bp downstream
Tssr36104	transcription start site region 36104	886 bp downstream
Tssr36105	transcription start site region 36105	963 bp downstream