rs37514802 SNP Detail

Summary

• ID
  rs37514802
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:27858336 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGCACCAGC CGGATTTCCA
  ACTGAAATCA AACTTCACCC CAAACCTGAT TCTCCTTTCC TGCCCCAGTT ATTATCTGAT
  GGTAGCCACA CCCGTCCGCA GCACTAAGCC AGAGCCTAAT CTTTGATGTC TTCCTGTGTC
  TTTCACATAT CCTTGTCTTT CCCTTGCCCC ATCCTCAAAC CCATTCTTGT GCTATCCCAA
  Y
  CCTTTGCACA CACCTATCCG CTCACCTAGA TACTCTGCTT TCCCCTGTCC CAAGTGAACC
  CTGTCAGAGC CTCCCCGGGT CATCCATCCC ATCTGCCCGA GCCTCCCAGT GCATCCGAAT
  CTTCTGCCTC ACTTCCCTGG CCCATCCTGA CAGCCTGCTT GTCCGCTGCA TCCCATCCTC
  AGCCTCCTCA TCCCATCCCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51887361	NES14907206	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs37514802					SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51887361	NES14907206	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:27858336 () rs orientation: forward

Symbol	Name	Function Class
Fcgbpl1	Fc fragment of IgG binding protein like 1	within coordinates
Rr170293	regulatory region 170293	241 bp proximal
Tssr2161	transcription start site region 2161	1885 bp downstream
Tssr65425	transcription start site region 65425	1837 bp downstream
Tssr65426	transcription start site region 65426	1376 bp downstream
Tssr65427	transcription start site region 65427	1347 bp downstream
Tssr65428	transcription start site region 65428	1330 bp downstream
Tssr65429	transcription start site region 65429	1317 bp downstream
Tssr65430	transcription start site region 65430	1271 bp downstream
Tssr65431	transcription start site region 65431	1257 bp downstream
Tssr65432	transcription start site region 65432	1234 bp downstream
Tssr65433	transcription start site region 65433	1122 bp downstream
Tssr65434	transcription start site region 65434	1062 bp downstream
Tssr65435	transcription start site region 65435	915 bp downstream
Tssr65436	transcription start site region 65436	515 bp upstream
Tssr65437	transcription start site region 65437	569 bp upstream