rs37515726 SNP Detail

Summary

• ID
  rs37515726
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:19526519 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTACTTTCT GTGTGCAAGG
  CATGCCACTG TGATGTTCAT TGTTTCCTCA TTTTGGAGGG TGTGTGTGTG TGTGTGTGTG
  TGTGTGTGTG TGTGTACTAC AGAATAATGA TGAAAAGCCA AGAGGCCACA GCAGAGTTAA
  AGAAGTTCTG GGATTAAATA TATTTTTCCA TTTTAATCAG TTCTATATAT GTGTTACTTT
  R
  TAAATATACA GACATTTTGA TATATCTTAT ATTAACTTCT AGTTTAACTT TATGGTTAAA
  ACAGTTCTAG AACTTAAATC TTACAAATTT TTGAGACTTC TTTTCTGACC AAGACTGTGA
  CTATATTCAT TTTATAGATT CTTACAATGA AGTACCATGG ATGAGGCAAC TCAGATGCCA
  GAAATTTACT TTCCTAAAAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51794129	NES14546369	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs37515726					SNP	A	A	A	A	A	A	A	A	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51794129	NES14546369	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:19526519 () rs orientation: forward

Symbol	Name	Function Class
Lamp3	lysosomal-associated membrane protein 3	1404 bp upstream
Rr391425	regulatory region 391425	852 bp downstream
Tssr140331	transcription start site region 140331	1472 bp upstream
Tssr140332	transcription start site region 140332	1436 bp upstream
Tssr140333	transcription start site region 140333	1417 bp upstream
Tssr140334	transcription start site region 140334	1370 bp upstream
Tssr140335	transcription start site region 140335	707 bp downstream