rs37518854 SNP Detail

Summary

• ID
  rs37518854
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:151996828 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATGTGACTA CCCCACAGAA
  ATCACTAACA TTTTATGTAA CAAAAACCTA AATTCACTTT CCTTCAACAT TCAATAGTTA
  AAGTTCAAGA GCAGCTTGAA TGAACATGGG CGTGATCCTG TCTCAGCAAA CAAACAAACA
  GACAAACAAA CAAAGGAACA GAAGAGCCAC GCGCTAGGCT GGAGGGCTGG GCTGGAGAGC
  Y
  GGCCTGAGGC TAACGCTAAG GCTAGCACTA CTGCACCAGC AGAGTCTCCA GTGGGGAACC
  TGGCAGTTCT GGTCTCCGGG GCATTCACAC TCATATGTGC ATTCCCACAC TTCATTAAAA
  ATAACATCTT TGGCCAGGCG GTGGTGGCGC ACGCCTTTAA TCCCAGCACT TGGGAGGCAG
  AGACAGGCGG ATTTCTGAGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51060102	NES13425203	PERLEGEN	MM_PANEL2	f	SNP	T		C	T	T	T	T	T	T	T	T	T
ss136101804	ENSMUSSNP5241785	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C			T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs37518854					SNP	T	T	C	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51060102	NES13425203	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:151996828 () rs orientation: forward

Symbol	Name	Function Class
Miga1	mitoguardin 1	within coordinates
Tssr32405	transcription start site region 32405	860 bp downstream