rs37522782 SNP Detail

Summary

• ID
  rs37522782
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  126
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:49288898 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTCGTGTAGG GGACCTACAA CCATTTGTGA CTACGTGTCC
  ATGGGATTGG ATGTTCTTTC CTAGATCCAC AGTGCCATTC ATGTTTGTAG TGCAAAACAC
  M
  CATATCCATA AAATAACAAA AAAATTAAAA GGTAGATAAT CCACTAACAT GGAAGTTTAG
  CAACTCCTTG TATGTTTTAT TGTATGGCAT AGTTTGCCAA                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	C3H/HeJ	CAST/EiJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51106820	NES13870962	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	C
SNP Consensus Information
SNP					Consensus Type	AKR/J	C3H/HeJ	CAST/EiJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs37522782					SNP	A	A	A	A	A	A	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51106820	NES13870962	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:49288898 () rs orientation: forward

Symbol	Name	Function Class
Kcnip4	Kv channel interacting protein 4	within coordinates
Tssr50936	transcription start site region 50936	484 bp upstream
Tssr50937	transcription start site region 50937	470 bp downstream