rs37524769 SNP Detail

Summary

• ID
  rs37524769
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  126
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:122520991 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AAGGTGGTAT TGGAACCTTG TCCTGCACTA GCCCTGTGGG
  TGTGGATATG GCGAGACTGG TGGGACAGAG GAGGAGAGAT TTATCAGGCA AAGCTGGCTG
  Y
  TGGCCACAGG TCTGGAGGTA GAAGTGGAGA TAGCAGAGAA GAGAGGGAAG AAATGACTTA
  ACCAGCAAAG ACAGCTTTGG AACTGAACCC CAACTTATGG                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51612617	NES14661346	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs37524769					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51612617	NES14661346	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:122520991 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13771	CpG island 13771	1450 bp proximal
Pde5a	phosphodiesterase 5A, cGMP-specific	1831 bp upstream
Tssr31509	transcription start site region 31509	1602 bp upstream
Tssr31510	transcription start site region 31510	1662 bp upstream
Tssr31511	transcription start site region 31511	1777 bp upstream
Tssr31512	transcription start site region 31512	1821 bp upstream
Tssr31513	transcription start site region 31513	1856 bp upstream