rs37525060 SNP Detail

Summary

• ID
  rs37525060
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr5:52521169 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCAGCAGTG GGAAAGGGAC
  TGGGAGGTGG GGACAAGGAG AAGATGAAGT GGGGGAGGAG GGGGAAAAGG AGGAAGAGGA
  GAAGGGGAGG AAGAGGAGGA GGAAGAAAAA GAGGAGGAGA AAGGAATAAG AAGGGGAGAA
  GGAGACGGAG TAGGAAGAGA AGGGAAAAGA AGGAGGGGGA GGAAGAGGAG GAGGCAGCAA
  W
  TTTACCACAA GGGACAGCCA AGCTGGCTTT GCTTCTCTTG GCCAGCCCAA TGACCTTCCT
  CCCATTTGCT GACCACTCCC CCGGGCTGGC CTCCCTGCTG CTCGCTCACA TAACAGCCAG
  CTGGACAGCT CTGGGGAGGC AACTCAGAGG CTCTTCCTCC GGCCTCTAGC TGGGTGCTGG
  CCTGAACTTC ACCAGAGGGA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss51118298	NES13854493	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	A	T	T	T	T	T	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs37525060					SNP	T	T	T	T	T	T	A	T	T	T	T	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51118298	NES13854493	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:52521169 () rs orientation: forward

Symbol	Name	Function Class
Rr611420	regulatory region 611420	26 bp distal
Rr611421	regulatory region 611421	within coordinates
Sod3	superoxide dismutase 3, extracellular	mRNA-UTR
Tssr46168	transcription start site region 46168	85 bp upstream
Tssr46169	transcription start site region 46169	98 bp upstream
Tssr46170	transcription start site region 46170	129 bp upstream