rs37528360 SNP Detail

Summary

• ID
  rs37528360
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:4252866 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATTACCAGC ATCCTCTCCT
  CCTCACTTGC TCACGTCTTC GGTGGATTCT GGCTGCTTCA TTTCCCAAAC AGATGGCAAA
  GTGGCCCTCC TTCTGTCTCC ACTGTCCTCC TTTCACTGTC CAGACACAGT CCTCAGTGAC
  CCGCCCCCCC CCCCCCCCCC GGTGGGCTTA ACTCTCCTGG CAAAGTCCAG TCTCTTGATC
  W
  GGAACTTTGA GGATCCAGGT CCCACAGAGG TCTTCACTGT CTCCTACCCC ACATGATCAC
  CTATCTCCAT AGCCCTGCCA GGCTCTTAGC GGCCACTCTG GCTGCTTCCA AGGCTGTAGC
  CTGCTTCTCC CATGCTGACT TCTCTTCCTG GGCTCAACAG CAAAGGTTCC CTCAGCAGAG
  AAAACCCTAG GCTTTGAGCC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50585402	NES13654365	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	T	A	A	T	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs37528360					SNP	A	A	A	A	A	A	A	T	A	A	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50585402	NES13654365	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:4252866 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10391	CpG island 10391	893 bp distal
Gm30082	predicted gene, 30082	within coordinates
Gm59014	predicted gene, 59014	1332 bp upstream
Rad9a	RAD9 checkpoint clamp component A	1205 bp upstream
Rr405788	regulatory region 405788	1003 bp downstream
Rr542669	regulatory region 542669	1104 bp distal
Rr542670	regulatory region 542670	354 bp distal
Rr542671	regulatory region 542671	537 bp proximal
Rr542672	regulatory region 542672	842 bp proximal
Rr542673	regulatory region 542673	1343 bp proximal
Tssr154297	transcription start site region 154297	1051 bp downstream
Tssr154298	transcription start site region 154298	1327 bp upstream
Tssr154299	transcription start site region 154299	1344 bp upstream
Tssr157469	transcription start site region 157469	1442 bp upstream
Tssr157470	transcription start site region 157470	1278 bp upstream
Tssr157471	transcription start site region 157471	1244 bp upstream