rs37530406 SNP Detail

Summary

• ID
  rs37530406
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  126
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:9110999 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ACCTGGGTCT TGTAGACACA TTATGACAAT TATTTTCCTA
  GAACATGGCC AAACACAAAA TAATTCACTC TGATTGCATT TCTATGACTT TTCGGAAACA
  Y
  AAACTCATTT CTTCTGAAGG AAGGAGTGGG AAAGAGCTTT GGGGCTTCTC TCAGCACCTC
  CCTTCTGACA GTGATGTGGG AGTCCCCTCC CCACATCATG                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50608106	NES13641747	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs37530406					SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50608106	NES13641747	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:9110999 () rs orientation: forward

Symbol	Name	Function Class
Asrgl1	asparaginase like 1	within coordinates
Cpgi10592	CpG island 10592	1049 bp proximal
Rr363785	regulatory region 363785	within coordinates
Tssr154969	transcription start site region 154969	1519 bp upstream
Tssr158099	transcription start site region 158099	1401 bp downstream
Tssr158100	transcription start site region 158100	1921 bp downstream
Tssr158101	transcription start site region 158101	1968 bp downstream