rs37531422 SNP Detail

Summary

• ID
  rs37531422
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:46653864 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GCCTGTAGTC TCAGCATTTA GGAGGTGGAA GCAGAAGGAT
  TGCTGTGAGT TTAGGGACTT AGAGTTTTAC GCCAGCCTGG CCTGTATCCT TGTCTCAAAA
  R
  CCCAGTATAT GTGTTCATTC AAAGCACATG TGTCAGCACA AATAATAAGC AGGTCTCCAT
  TTACTCCAGA CAAAAGAGAG TCAAGAGGTG CCTGCTAGG                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	C3H/HeJ	CAST/EiJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51103935	NES14353323	PERLEGEN	MM_PANEL2	f	SNP	G	G	A	G	G	G	A	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	C3H/HeJ	CAST/EiJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs37531422					SNP	G	G	A	G	G	G	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51103935	NES14353323	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:46653864 () rs orientation: forward

Symbol	Name	Function Class
Cap2	cyclase associated actin cytoskeleton regulatory protein 2	1515 bp upstream
Cpgi5539	CpG island 5539	1395 bp proximal
Gm35110	predicted gene, 35110	within coordinates
Rr478915	regulatory region 478915	1289 bp proximal
Rr478916	regulatory region 478916	1471 bp proximal
Rr478917	regulatory region 478917	1572 bp proximal
Tssr119597	transcription start site region 119597	1471 bp upstream
Tssr119598	transcription start site region 119598	1510 bp upstream
Tssr119599	transcription start site region 119599	1649 bp upstream
Tssr119600	transcription start site region 119600	1661 bp upstream
Tssr119601	transcription start site region 119601	1725 bp upstream
Tssr119602	transcription start site region 119602	1753 bp upstream