rs37533399 SNP Detail

Summary

• ID
  rs37533399
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:131015104 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCAGCCATG TTTGTTTGAC
  TTGACTGTGA TAACTGAGGC CAAGTCCAGA CTCGAGGAAG AGCGGGGCCT GTAGGTAAGA
  CAGGCAGGCA GGAGAAGGGC TGTGTCTCTG ATGTAGAATT AGAGTCAAAG CAAGGGTTCC
  TACAGCTGGG GTTGGGGACA GGTCCCAGCA GACGGACAGG TTGCCTGCCA TGGTAGAAGA
  Y
  ATCCTCCGCT CCCTGTGGTC ATTCAGCTCT AATCCCCAGC AGCCTGGCCT GGGCCAGCAG
  CCTAGGACTT CAAGGCCATA CCTTCTTAGG AAACAATATT TTCCCGTCAC AGACTCAGAG
  GGAAACTGCC CAGGAAGAGC AGCTTGGCCC GAGCCTTTGA ACATCCTTCA TGCAAAAGTG
  CAAAATAAAC AAGGACCTCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51634241	NES14648954	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs37533399					SNP	C	C	C	C	C	C	T	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51634241	NES14648954	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:131015104 () rs orientation: forward

Symbol	Name	Function Class
Lef1	lymphoid enhancer binding factor 1	within coordinates
Rr585299	regulatory region 585299	1715 bp distal
Rr585300	regulatory region 585300	1671 bp distal
Tssr31723	transcription start site region 31723	1336 bp upstream