rs37535796 SNP Detail

Summary

• ID
  rs37535796
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:60727418 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAACTGAAAG GATCTGCTGC
  AACAGCTTCC ACGTTCTTAA CTGCTGAGCC ATCTCTCCAG CTCCCAATAG AATGGTTTTC
  ATGGTGATTT TTCTTCTTCC CTTTTTTGCC TCTCTCCCAT CTTGTTTAGA ACATATATTA
  GTATTTTATT TAGTATTTGC TTTTTTTCCT ACCGTGAACA CACCGTTGTA GAACAAAATT
  M
  CCCCTGCGTG TAGTTTAGAA AGGGGTGTGG AAGCTTCCGA ATGACTGCTG TGGTGTTTAA
  AGTGCCTGAG ATGCATCACC CATTGTTTTG ATTCATCATT AATTTGCCTT AAATTTTTTG
  TTTTGCATTT TAAAAAGTTA TACTGAAGAC ATAACTTGTA TGAATTTGCA GAGCCTGAAT
  TTCTGTGGCA AAAACTTCAG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50715197	NES14255696	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	A	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs37535796					SNP	C	C	C	C	C	C	C	C	C	A	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50715197	NES14255696	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:60727418 () rs orientation: forward

Symbol	Name	Function Class
Gm9869	predicted gene 9869	1416 bp downstream
Rr196167	regulatory region 196167	218 bp distal
Rr201055	regulatory region 201055	1418 bp distal
Rr209918	regulatory region 209918	132 bp distal
Rr209919	regulatory region 209919	783 bp proximal
Rr209920	regulatory region 209920	1983 bp proximal
Rr383461	regulatory region 383461	784 bp upstream
Uaca	uveal autoantigen with coiled-coil domains and ankyrin repeats	within coordinates