rs37536686 SNP Detail

Summary

• ID
  rs37536686
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:11350806 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGATA TGCATTTGTG TTCCCCTTTA
  Y
  TTAAACTTAA ACCTCATGTG GAGAC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50595988	NES13637751	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs37536686					SNP	C	C	C	C	C	C	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50595988	NES13637751	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:11350806 () rs orientation: forward

Symbol	Name	Function Class
Ms4ac	membrane-spanning 4-domains, subfamily A cluster	within coordinates
Rr544325	regulatory region 544325	1989 bp distal
Rr544326	regulatory region 544326	1531 bp proximal
Tssr155162	transcription start site region 155162	902 bp downstream
Tssr155163	transcription start site region 155163	886 bp downstream
Tssr155164	transcription start site region 155164	855 bp downstream
Tssr155165	transcription start site region 155165	770 bp downstream
Tssr155166	transcription start site region 155166	729 bp downstream
Tssr158339	transcription start site region 158339	1181 bp upstream
Tssr158340	transcription start site region 158340	1069 bp upstream
Tssr158341	transcription start site region 158341	1052 bp upstream
Tssr158342	transcription start site region 158342	493 bp upstream