rs37537139 SNP Detail

Summary

• ID
  rs37537139
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:131454464 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCCGCGCGC AGGAAGAGCG
  AGCAGAGGCC GCGCGGTGCG GGAGGACAGG AAGCAGGAGG CGGGCGTGAG GTGGGGTCCT
  GAGGCAGGAG AGAGCCCGGG CCAGCTCGAG CCGCCCAAGC TTGGACGACC AGAGAGGGCG
  CCGAGAGGAC GGCTTTGGGG GCGAGGCAGT GAGGGAAACC GCGGTGGACC GCTGCAACGT
  K
  AAGTGTAGGA TGTTGGCAAC TTTCGGGACC CGCATGAGGT TTGGGTATCA GAGTGGGTGG
  AGAAGCCCTG GGAGACAGAC TGGAGGGCTG GACGGAGAAA GCACCCTGCA AGCCGTGAGG
  AACACCCCAT CTTTCCGGGT CCTGGGCTGG CAGCCAAGGC TAGGAGACCA GGGACGAGAC
  CAGCGGACCG TTACGGCGAG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51368058	NES14475966	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs37537139					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51368058	NES14475966	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:131454464 () rs orientation: forward

Symbol	Name	Function Class
Cpgi711	CpG island 711	within coordinates
Fam72a	family with sequence similarity 72, member A	1177 bp upstream
Gm70877	predicted gene, 70877	within coordinates
Rr396286	regulatory region 396286	556 bp upstream
Rr396287	regulatory region 396287	867 bp upstream
Rr418128	regulatory region 418128	1593 bp distal
Rr418129	regulatory region 418129	92 bp distal
Rr418130	regulatory region 418130	477 bp distal
Rr418131	regulatory region 418131	within coordinates
Rr418132	regulatory region 418132	611 bp proximal
Rr418133	regulatory region 418133	1408 bp proximal
Srgap2	SLIT-ROBO Rho GTPase activating protein 2	within coordinates
Tssr8627	transcription start site region 8627	1447 bp downstream
Tssr8628	transcription start site region 8628	1273 bp downstream
Tssr8629	transcription start site region 8629	1132 bp upstream
Tssr8630	transcription start site region 8630	1175 bp upstream
Tssr8631	transcription start site region 8631	1254 bp upstream
Tssr8632	transcription start site region 8632	1635 bp upstream
Tssr13589	transcription start site region 13589	1564 bp upstream
Tssr13590	transcription start site region 13590	1494 bp upstream
Tssr13591	transcription start site region 13591	1467 bp upstream
Tssr13592	transcription start site region 13592	1375 bp upstream
Tssr13593	transcription start site region 13593	1298 bp upstream
Tssr13594	transcription start site region 13594	1188 bp upstream
Tssr13595	transcription start site region 13595	1141 bp upstream
Tssr13596	transcription start site region 13596	1108 bp upstream
Tssr13597	transcription start site region 13597	879 bp upstream
Tssr13598	transcription start site region 13598	178 bp upstream
Tssr13599	transcription start site region 13599	136 bp upstream
Tssr13600	transcription start site region 13600	within coordinates
Tssr13601	transcription start site region 13601	540 bp downstream
Tssr13602	transcription start site region 13602	576 bp downstream
Tssr13603	transcription start site region 13603	797 bp downstream