rs37537139 SNP Detail

Summary

• ID
  rs37537139
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:131454464 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCCGCGCGC AGGAAGAGCG
  AGCAGAGGCC GCGCGGTGCG GGAGGACAGG AAGCAGGAGG CGGGCGTGAG GTGGGGTCCT
  GAGGCAGGAG AGAGCCCGGG CCAGCTCGAG CCGCCCAAGC TTGGACGACC AGAGAGGGCG
  CCGAGAGGAC GGCTTTGGGG GCGAGGCAGT GAGGGAAACC GCGGTGGACC GCTGCAACGT
  K
  AAGTGTAGGA TGTTGGCAAC TTTCGGGACC CGCATGAGGT TTGGGTATCA GAGTGGGTGG
  AGAAGCCCTG GGAGACAGAC TGGAGGGCTG GACGGAGAAA GCACCCTGCA AGCCGTGAGG
  AACACCCCAT CTTTCCGGGT CCTGGGCTGG CAGCCAAGGC TAGGAGACCA GGGACGAGAC
  CAGCGGACCG TTACGGCGAG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51368058	NES14475966	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs37537139					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51368058	NES14475966	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:131454464 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Fam72a	family with sequence similarity 72, member A			mRNA-UTR
Gm70877	predicted gene, 70877			within coordinates
Rr396286	regulatory region 396286			556 bp upstream
Rr396287	regulatory region 396287			867 bp upstream
Rr418128	regulatory region 418128			1593 bp distal
Rr418129	regulatory region 418129			92 bp distal
Rr418130	regulatory region 418130			477 bp distal
Rr418131	regulatory region 418131			within coordinates
Rr418132	regulatory region 418132			611 bp proximal
Rr418133	regulatory region 418133			1408 bp proximal
Srgap2	SLIT-ROBO Rho GTPase activating protein 2			Intron
				Noncoding-Transcript-Variant
Tssr8627	transcription start site region 8627			1447 bp downstream
Tssr8628	transcription start site region 8628			1273 bp downstream
Tssr8629	transcription start site region 8629			1132 bp upstream
Tssr8630	transcription start site region 8630			1175 bp upstream
Tssr8631	transcription start site region 8631			1254 bp upstream
Tssr8632	transcription start site region 8632			1635 bp upstream
Tssr13589	transcription start site region 13589			1564 bp upstream
Tssr13590	transcription start site region 13590			1494 bp upstream
Tssr13591	transcription start site region 13591			1467 bp upstream
Tssr13592	transcription start site region 13592			1375 bp upstream
Tssr13593	transcription start site region 13593			1298 bp upstream
Tssr13594	transcription start site region 13594			1188 bp upstream
Tssr13595	transcription start site region 13595			1141 bp upstream
Tssr13596	transcription start site region 13596			1108 bp upstream
Tssr13597	transcription start site region 13597			879 bp upstream
Tssr13598	transcription start site region 13598			178 bp upstream
Tssr13599	transcription start site region 13599			136 bp upstream
Tssr13600	transcription start site region 13600			within coordinates
Tssr13601	transcription start site region 13601			540 bp downstream
Tssr13602	transcription start site region 13602			576 bp downstream
Tssr13603	transcription start site region 13603			797 bp downstream