rs37537543 SNP Detail

Summary

• ID
  rs37537543
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:36054165 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGAAT GCGAGGAGGT GATGATTATG
  R
  TGAAGTAATC TATCTACATG ACTTG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	BTBR T<+> Itpr3/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ
ss51452908	NES14433070	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	G	G
SNP Consensus Information
SNP					Consensus Type	AKR/J	BTBR T<+> Itpr3/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ
rs37537543					SNP	A	A	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51452908	NES14433070	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:36054165 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13078	CpG island 13078	221 bp proximal
Mccc1	methylcrotonoyl-Coenzyme A carboxylase 1 (alpha)	within coordinates
Mccc1os	methylcrotonoyl-Coenzyme A carboxylase 1 (alpha), opposite strand	within coordinates
Rr397641	regulatory region 397641	538 bp upstream
Rr575296	regulatory region 575296	93 bp distal
Rr575297	regulatory region 575297	within coordinates
Rr575298	regulatory region 575298	652 bp proximal
Rr575299	regulatory region 575299	754 bp proximal
Tssr28858	transcription start site region 28858	401 bp upstream
Tssr33012	transcription start site region 33012	548 bp downstream
Tssr33013	transcription start site region 33013	601 bp downstream
Tssr33014	transcription start site region 33014	634 bp downstream
Tssr33015	transcription start site region 33015	646 bp downstream