rs37537572 SNP Detail

Summary

• ID
  rs37537572
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr9:15640796 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCTAGGTTT GAGACCTACT
  GATCAGTGGG GTAGACTTGA ACTATTGTTT GGCTTTTCTA CTGACCAGTA ACTTAATCTT
  AGACATGTTT TCTTAGGGTC TAAGTCTTTT CCTTGGTAGG TTAAGTGATG ATATTAGACT
  AGACTTTTAG GATTAATGGG AATAATTATT GGAAGTACAA GCCTATAAAA GCCTCAAGGT
  Y
  GCATACTGAA AACTCTTGTA TCATATAACT TCAGATACAC AACAACTTTG TTTTGTCTGT
  GTCACACATA TTTAATATGC CCAAATAGAG CATTTTTTTA ATTTTAAAAT TTCTATTATG
  TATGTGTGTG TTTTGTCTGC AAGTGTGGTT GTACACCCAA GTGCACGCCT GCATGGTGGC
  CAGAAGGTGA TGAGACCTTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss51992402	NES15008266	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs37537572					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51992402	NES15008266	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:15640796 () rs orientation: forward

Symbol	Name	Function Class
Slc36a4	solute carrier family 36 (proton/amino acid symporter), member 4	Intron
Tssr83873	transcription start site region 83873	140 bp downstream
Tssr83874	transcription start site region 83874	1340 bp upstream
Tssr83875	transcription start site region 83875	1357 bp upstream
Tssr83876	transcription start site region 83876	1421 bp upstream