rs37541261 SNP Detail

Summary

• ID
  rs37541261
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  126
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:6214335 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CCAGGATACG GTCTTGTTAA CTGCTCCCAT CTACCCTCCA
  CCATCCTTCT TCTAGAGAAG GGGCCTAACC GGAAGGCTGC TCTTGTTAGG AAGTTCCACC
  Y
  ACGTGAGTGA GCGTGAGCGA GCAAGAGCCA GGGATTCTGG GCAGCCCATG GTTTTAGGAG
  AAACTGAAAC TGGGTGTGCT AGGGGCGGAG TGGCCACTGG                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50575252	NES13648781	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs37541261					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50575252	NES13648781	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:6214335 () rs orientation: forward

Symbol	Name	Function Class
Batf2	basic leucine zipper transcription factor, ATF-like 2	89 bp upstream
Rr363687	regulatory region 363687	within coordinates
Tssr154583	transcription start site region 154583	128 bp upstream
Tssr154584	transcription start site region 154584	145 bp upstream
Tssr154585	transcription start site region 154585	173 bp upstream
Tssr154586	transcription start site region 154586	1433 bp upstream
Tssr154587	transcription start site region 154587	1461 bp upstream