rs37542322 SNP Detail

Summary

• ID
  rs37542322
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:118353955 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTTCAGTAG ACAGCGAAGT
  CAGACACTGA TCCTGTTTAT TTTGGAACCT GCATCTGAAA CAGAAGACTT ATATCAAGCA
  AGTCACATGC GAATGAGCAG GCAAATAAAC TTGACATGAC CATTAAGAAA AACCTAGGCT
  GTTGTAAGCT AGAATGGCAG AGGTAGGCAG GGCAGGTCTA ATTTCTCTTG GTGGTTGGAA
  Y
  GATTCAGAGG CTCAAGGATT AGTGAGAAGG GAAGCAGTAT CTTGGGGAGA GAAATGAGGA
  GAATCAGGGA AGAGATGAAA GTTCAGAACA ATGCTTGGTG GGTGTAACAG TTGTTAGGGA
  GGAGAGACCC CAGTGAGGTA GAAGGTGGAC AGGAGCTTGT CACGCAGATA TGAACAAGAA
  GGATAACAAC AACAACAATA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss51603647	NES14666214	PERLEGEN	MM_PANEL2	f	SNP	T	T	C	T	C	T
SNP Consensus Information
SNP					Consensus Type	AKR/J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs37542322					SNP	T	T	C	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51603647	NES14666214	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:118353955 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13752	CpG island 13752	1726 bp proximal
Dpyd	dihydropyrimidine dehydrogenase	1823 bp upstream
Rr583905	regulatory region 583905	1357 bp proximal
Rr583906	regulatory region 583906	1885 bp proximal
Tssr31414	transcription start site region 31414	1839 bp upstream
Tssr31415	transcription start site region 31415	1856 bp upstream