rs37543608 SNP Detail

Summary

• ID
  rs37543608
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  126
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:8441633 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCACGGCAGC TTCCATCTCG GTGGAATCAT TCTGACGAAT
  CTGAGAGGTC ATGGCTGATC CGGAGTATGA GCTAACCATG AATAGACGGT GCAGACTGGT
  Y
  CTAGGAGCCA AAGGCAGCAA GGAGATGATG GTTCCAGAGG CTGCGACTGG AGAGACTTGT
  AAAGCGGCTG GAAGCTAGTA CAGTGGGAGT CCCTGGGTCT                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	CAST/EiJ	FVB/NJ	PWD/PhJ	WSB/EiJ
ss51776913	NES14544642	PERLEGEN	MM_PANEL2	f	SNP	T	C	T	C	T
SNP Consensus Information
SNP					Consensus Type	A/J	CAST/EiJ	FVB/NJ	PWD/PhJ	WSB/EiJ
rs37543608					SNP	T	C	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51776913	NES14544642	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:8441633 () rs orientation: forward

Symbol	Name	Function Class
Gm7541	predicted gene 7541	49 bp upstream
Gm49549	predicted gene, 49549	1440 bp downstream
Gm55031	predicted gene, 55031	499 bp upstream
Tssr139859	transcription start site region 139859	158 bp downstream