rs37547528 SNP Detail

Summary

• ID
  rs37547528
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr9:40368413 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGGAT GTAGAAGTGA TCTGCTTTAG
  R
  AAGACATTCT GTGTTGGACT GAGCT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss50677575	NES14010810	PERLEGEN	MM_PANEL2	f	SNP	A	G	A	A	A	G	G	G	G		G	A	G	G		G
ss322916253	CHEV_9_40264702	CHEVERUD	SCREENING_POP	f	SNP										A					A
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs37547528					SNP	A	G	A	A	A	G	G	G	G	A	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50677575	NES14010810	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:40368413 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi21594	CpG island 21594			750 bp distal
Gramd1b	GRAM domain containing 1B			Intron
				mRNA-UTR
				Noncoding-Transcript-Variant
Rr676839	regulatory region 676839			1692 bp distal
Rr676840	regulatory region 676840			863 bp distal
Rr676841	regulatory region 676841			1261 bp distal
Rr676842	regulatory region 676842			1564 bp proximal
Rr676843	regulatory region 676843			1935 bp proximal
Tssr84449	transcription start site region 84449			1796 bp downstream
Tssr84450	transcription start site region 84450			1207 bp downstream
Tssr84451	transcription start site region 84451			538 bp upstream
Tssr84452	transcription start site region 84452			566 bp upstream
Tssr84453	transcription start site region 84453			1307 bp upstream
Tssr88934	transcription start site region 88934			1733 bp upstream
Tssr88935	transcription start site region 88935			1682 bp upstream
Tssr88936	transcription start site region 88936			1661 bp upstream
Tssr88937	transcription start site region 88937			1597 bp upstream
Tssr88938	transcription start site region 88938			1340 bp upstream
Tssr88939	transcription start site region 88939			1305 bp upstream
Tssr88940	transcription start site region 88940			1273 bp upstream
Tssr88941	transcription start site region 88941			984 bp upstream
Tssr88942	transcription start site region 88942			969 bp upstream
Tssr88943	transcription start site region 88943			941 bp upstream
Tssr88944	transcription start site region 88944			893 bp upstream
Tssr88945	transcription start site region 88945			876 bp upstream
Tssr88946	transcription start site region 88946			780 bp upstream
Tssr88947	transcription start site region 88947			751 bp upstream
Tssr88948	transcription start site region 88948			721 bp upstream
Tssr88949	transcription start site region 88949			355 bp downstream