rs37547896 SNP Detail

Summary

• ID
  rs37547896
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  126
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr8:84442249 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCGGCTTCCG GGGACGGTGA TGGGAATGGC GGCTCTCGGA
  GGCCCCATGT GTACCGTGGT GGGATTGAGG GACCGGGCGG ATCCACACTG CGTTTTCGGT
  M
  ACGGCGAGAG GACTCAGGCT ATCTGGGCAG ACGTCCCGAG TCTGCAGTCA CCGGCTTCCC
  GTCTTGTTCC GCCGCTCGCC CAGGAGATTC TTCTCCAGAC                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51971795	NES14985363	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	A	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs37547896					SNP	C	C	C	C	C	C	C	C	C	A	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51971795	NES14985363	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:84442249 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi20654	CpG island 20654			within coordinates
Ddx39a	DEAD box helicase 39a			Intron
				mRNA-UTR
				Noncoding-Transcript-Variant
Rr382392	regulatory region 382392			1513 bp downstream
Rr401010	regulatory region 401010			345 bp downstream
Rr666291	regulatory region 666291			1072 bp distal
Rr666292	regulatory region 666292			62 bp distal
Rr666293	regulatory region 666293			within coordinates
Rr666294	regulatory region 666294			968 bp proximal
Tssr78284	transcription start site region 78284			416 bp downstream
Tssr78285	transcription start site region 78285			382 bp downstream
Tssr78286	transcription start site region 78286			332 bp downstream
Tssr78287	transcription start site region 78287			308 bp downstream
Tssr78288	transcription start site region 78288			96 bp downstream