rs37553074 SNP Detail

Summary

• ID
  rs37553074
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:65547061 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTATTTTGG GGGGCTGAAG
  TTGGAACACA GGGCCTCACA CATGTTAGGC AAGTAGTCTA CCATGGAGCT ATGTTCCCAC
  CCCCATGTGG TTCTTTTACT GTTTTTAATA TAGTATATTA CATTTAAGAC TTGGCTCTCT
  ATAGAGAAGG ATAAAGAAAA ACACAAATTA CTGGAAAAAA AAAGGAGGCC ATTGCACTGT
  R
  GTGTCTAATG CTGTGACTTA TATGTACTAC TCTTTCTGAT TTAGTAGACA TTTATTAGCT
  TTTTGTATGT TGTGTTAAAG GACAATCTTA ACACTTCATT TTGATGTATT ACCTCATTAA
  CCTTTCATGG TTGGACCAAT TTGTTTATAA TATATGAGGC AGCTTTGTCC TGTGAGAATA
  TTTTCCACTG ACGCAGCAGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50965348	NES13945723	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs37553074					SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50965348	NES13945723	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:65547061 () rs orientation: forward

Symbol	Name	Function Class
Gm65444	predicted gene, 65444	314 bp upstream
Rr577716	regulatory region 577716	1939 bp distal
Rr577717	regulatory region 577717	325 bp distal
Rr577718	regulatory region 577718	within coordinates
Tssr33467	transcription start site region 33467	337 bp upstream