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rs37553960 SNP Detail
Summary
  • ID
    rs37553960
  • Variation Type
    SNP
  • Alleles
    A/G
Genome Location and Flanking Sequence
  • Location
    Chr3:65734048 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                GGAGGAACTG GGTACGGATC
    TTATGTAACC TTCTAAAATA TTGGGATTGT GGGTGATCTT AAACCTTTTG ATATCTAAAA
    CTGCTTCCAA ATATGAAATC TGCTTCAAAA AGAATTTACA TAGGAAAAAT TTGACAAAAC
    TTTGATGATG ATGGATTTAT GTAAACCTGC AAAGTAGAAT TTTATGAATA CATAGCATTT
    R
    CAAGCACAAA TGCCTTATTT TCAGAAGGGA TTTCCTTCAT CTGGGAGTAC ATATTTATTT
    ACTTCAAATG CATATGTAAT TGATATTGAA AAAACCAGCA TGCTCCTCTC TGATAATTCT
    ATGTAGGAGA ATAAGAAACC TAAGTCCAGT CAGTAAGTTA TCCAACAAGT GATTCTCAGC
    CCTGAGACGT GAAATCACAG                                            
    
    R = A/G
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
A/J
BALB/cByJ
CAST/EiJ
DBA/2J
FVB/NJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
WSB/EiJ
ss50963792 NES13941970 PERLEGEN MM_PANEL2 f SNP G G A G G G G G G G
SNP Consensus Information
SNP Consensus Type
A/J
BALB/cByJ
CAST/EiJ
DBA/2J
FVB/NJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
WSB/EiJ
rs37553960 SNP G G A G G G G G G G
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss50963792 NES13941970 PERLEGEN MM_PANEL f SNP A/G
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr3:65734048 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Lekr1 leucine, glutamate and lysine rich 1 Intron
Rr577736 regulatory region 577736 1442 bp distal
Rr577737 regulatory region 577737 1385 bp proximal

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
03/25/2025
MGI 6.24
The Jackson Laboratory