rs37556595 SNP Detail

Summary

• ID
  rs37556595
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:97804827 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCGTGGGCTA CTCCTCTTTT
  TTCCTTGGCA GAGATCTTCA GTTGTTTTGT TAGAAAACCT CAGAGCTCTG TACCTTTTCC
  TTCCTAGAGA GTTTGCAAAC AAGGGGGGTT GTTTTTATGT CTCAGCAGCG TCCGTCCGTG
  GCTGCTGTTA ACGTAGCTCA GCACTAGGTG TTTTCAAAGC ACATCTGAGT GGAAGCATTT
  Y
  ACTTCTTTGA ATCCTTTTCT TTTGTGGTGT GGCATCTTGT ACATATTGAT CACTGTTTCC
  ATGATCTAAT AGGCAACTGA TGATATTTTT GGGACTGGAG GATTTGTGGA GGGGAGATCT
  CTTCTCGCCT CTCACCTTTG CGCCTTTGCC TTGCAAGTAT GAATGATCTC TTGTCCTCCT
  GTTTAATGCA CGCCACATGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51375349	NES13725659	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs37556595					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51375349	NES13725659	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:97804827 () rs orientation: forward

Symbol	Name	Function Class
Mitf	melanogenesis associated transcription factor	within coordinates
Rr635225	regulatory region 635225	1069 bp proximal
Tssr1945	transcription start site region 1945	550 bp downstream
Tssr57866	transcription start site region 57866	897 bp downstream
Tssr57867	transcription start site region 57867	624 bp downstream
Tssr57868	transcription start site region 57868	602 bp downstream
Tssr57869	transcription start site region 57869	564 bp downstream
Tssr57870	transcription start site region 57870	405 bp downstream
Tssr57871	transcription start site region 57871	387 bp downstream
Tssr57872	transcription start site region 57872	373 bp upstream
Tssr57873	transcription start site region 57873	424 bp upstream
Tssr57874	transcription start site region 57874	434 bp upstream
Tssr57875	transcription start site region 57875	451 bp upstream
Tssr57876	transcription start site region 57876	486 bp upstream
Tssr57877	transcription start site region 57877	1394 bp upstream
Tssr57878	transcription start site region 57878	1438 bp upstream
Tssr57879	transcription start site region 57879	1454 bp upstream
Tssr57880	transcription start site region 57880	1507 bp upstream
Tssr57881	transcription start site region 57881	1707 bp upstream
Tssr57882	transcription start site region 57882	1805 bp upstream