rs37557400 SNP Detail

Summary

• ID
  rs37557400
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:60726643 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAACTGCCT GCCGCTGATT
  CCATGCAGAT CAGTAGACTC TGAAGGGAAC ACCCCAGCGC AGCTATGAAG CACGTCTCAG
  CTGAACATTT ATTATAAGAA GCACACTATG TGCACCACTC AGAAGGATAA TCTAGTGCTT
  TTCAAGGATA TGTGTTTAGA TTCCTGCACT CTTAGAGATT CTTCTCTGCA GGACACAGCT
  Y
  GGTCCAGTTA TTGTATCCTG TTATGTTGGA TAATAAGGAG ATTCATTTGG AAAGTGTCTG
  TTGTACATTG TCTGCCCAAA CTATGTACCC AAATAATTTA TTCATATGTC CTGTAGTAAC
  AAAAACTAGT CTTGGTTGGA TCATTTTGTT TGTTTGTTGT TGTTTTTTGT TTTTTACCCC
  AAGGCAAAGA CCAGATTTCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50715205	NES14255708	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs37557400					SNP	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50715205	NES14255708	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:60726643 () rs orientation: forward

Symbol	Name	Function Class
Rr196167	regulatory region 196167	within coordinates
Rr201055	regulatory region 201055	643 bp distal
Rr209916	regulatory region 209916	1843 bp distal
Rr209917	regulatory region 209917	1443 bp distal
Rr209918	regulatory region 209918	within coordinates
Rr209919	regulatory region 209919	1558 bp proximal
Rr383461	regulatory region 383461	1559 bp upstream
Uaca	uveal autoantigen with coiled-coil domains and ankyrin repeats	within coordinates