rs37557724 SNP Detail

Summary

• ID
  rs37557724
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:49595151 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGTGGCCTG CCGAGTAAGT
  GAGCATCCTT TCCTCCTGCA GTAAATATCT TAGTATCTGC AGCAAAAGCC ATGCCCCCAT
  CCCTGTTGCC TCTTCGCTCT GTGTAGTGCT TTTAGATTCC TTTAGGTTTT CTCAGTTGGG
  TCGTGTATAC ATTTTAAACT TCGGTGGCTA CAACAAAAGA TTGTGTCGGG TTATCATTCT
  R
  CTGGCAGCAC AAGACTGCAT GTCCTATCCC TGGCTGTTAG CAGCTTAGAG ACTTGCCATC
  CTCATGGCCA AACCTTTAAG TACCTGCTTT TTTCTTCTGC TCACACGAGG GCTGCACTGG
  CACTGACTGA AGCTAAGAGT AACTGGAGTT TCCTAGGGTG AGGGGTCAAG TTGGCTCCTT
  GCTATTTAGG GTTGTATACC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss51106141	NES14353454	PERLEGEN	MM_PANEL2	f	SNP	G	G	A	G	G	A	G	A	G
SNP Consensus Information
SNP					Consensus Type	A/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs37557724					SNP	G	G	A	G	G	A	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51106141	NES14353454	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:49595151 () rs orientation: forward

Symbol	Name	Function Class
Ippk	inositol 1,3,4,5,6-pentakisphosphate 2-kinase	within coordinates
Rr276357	regulatory region 276357	1951 bp distal
Rr276358	regulatory region 276358	1250 bp proximal
Rr279502	regulatory region 279502	1670 bp distal
Rr279503	regulatory region 279503	200 bp distal