rs37558367 SNP Detail

Summary

• ID
  rs37558367
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:6095517 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAAGGCCAA CATGGACACA
  GAACTTAAAT AAAAACAGAC AGAGGAAGTA AGACAGATAT ATACCTGGGG GAGAGGAGGG
  ATTGCCACAA AATGTAGGAG ATTTTCAAGA ATGGGGGAGG ATGAGTGTGT AGGGTTAAAG
  GTAGCCAGTA GAAGTTCATA GCTAGCCTTA TGGAGGAAGG AAAGGGGAGC CATCTCGGGA
  Y
  GTTAACTGTT AAAGACAACA GGTGGTGGTG AAGATGGCTG AGACCAAGAG CACAGGGCTG
  AGGGGCAGAC AGGCACTGAC ACTGCTACCC TTTAATACAG TTCCTCCTGT TGTGATCCCC
  AACCATAATT ACTTCGTTGC TACTTCATAA CTGTAATTTT GCTAGTTATG AATTGTAAGT
  AAACGTCTGA TATGCAGGAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50575714	NES13653314	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs37558367					SNP	T	T	T	T	T	T	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50575714	NES13653314	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:6095517 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10491	CpG island 10491	727 bp proximal
D530017H19Rik	RIKEN cDNA D530017H19 gene	within coordinates
Gm8034	predicted gene 8034	665 bp upstream
Gm59262	predicted gene, 59262	615 bp upstream
Rr370438	regulatory region 370438	821 bp upstream
Rr405816	regulatory region 405816	1006 bp downstream
Rr405817	regulatory region 405817	236 bp upstream
Rr543275	regulatory region 543275	1047 bp distal
Rr543276	regulatory region 543276	1183 bp distal
Rr543277	regulatory region 543277	298 bp proximal
Rr543278	regulatory region 543278	572 bp proximal
Rr543279	regulatory region 543279	1186 bp proximal
Rr543280	regulatory region 543280	1525 bp proximal
Rr543281	regulatory region 543281	1628 bp proximal
Rr543282	regulatory region 543282	1821 bp proximal
Rr543283	regulatory region 543283	1884 bp proximal
Rr543284	regulatory region 543284	1932 bp proximal
Syvn1	synovial apoptosis inhibitor 1, synoviolin	1089 bp upstream
Tssr154538	transcription start site region 154538	617 bp upstream
Tssr154539	transcription start site region 154539	1142 bp upstream
Tssr154540	transcription start site region 154540	1534 bp upstream
Tssr154541	transcription start site region 154541	1568 bp upstream
Tssr154542	transcription start site region 154542	1594 bp upstream
Tssr157816	transcription start site region 157816	586 bp upstream
Tssr157817	transcription start site region 157817	1461 bp downstream
Tssr157818	transcription start site region 157818	1923 bp downstream