rs37559236 SNP Detail

Summary

• ID
  rs37559236
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:72324085 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTCAGCAGC TGTGTGCAGA
  GGGCTAGGAA GTGGGGAAAG GCTTAGGTTA GCTGAAGGGA AGCCATCCAG GTCCCAGATC
  CCTTCTTCTT CAGGGAGGGA GTCGAAAGGG AGGAGGGGGT GGGGCAGGAG AGGGCACACA
  GTTGCAGTTA TCCACAGAGC CTAAATAATG AATGATTAAA CAAAATGATT TTAGGCCACC
  Y
  TCACCTCATT CTCAGTGCCC CACCCAGAAA TGAAAAAAAA AAGCACCCTT CCATAGATTT
  GAGACCTGGT CCGTTTCATC TGGGTTATAT AGCAGCAGAT AAAGATGAAT CGTTGCATGG
  TTCTTGTAAG ATTCATTTCT AGGTTTATGG TTTTGGAACC TGCCTTTTAG CTCCTACCTT
  CAGCAAGGAA CTTATCAGCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C3H/HeJ	CAST/EiJ	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ
ss51274558	NES14276918	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C3H/HeJ	CAST/EiJ	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ
rs37559236					SNP	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51274558	NES14276918	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:72324085 () rs orientation: forward

Symbol	Name	Function Class
Cpgi355	CpG island 355	433 bp distal
Gm51631	predicted gene, 51631	1892 bp downstream
Pecr	peroxisomal trans-2-enoyl-CoA reductase	612 bp upstream
Rr412794	regulatory region 412794	1940 bp distal
Rr412795	regulatory region 412795	547 bp distal
Rr412796	regulatory region 412796	within coordinates
Rr412797	regulatory region 412797	1599 bp proximal
Tmem169	transmembrane protein 169	Intron
Tssr114	transcription start site region 114	647 bp upstream
Tssr115	transcription start site region 115	633 bp upstream
Tssr116	transcription start site region 116	613 bp upstream
Tssr7298	transcription start site region 7298	507 bp downstream
Tssr12164	transcription start site region 12164	698 bp upstream
Tssr12165	transcription start site region 12165	660 bp upstream