rs37561180 SNP Detail

Summary

• ID
  rs37561180
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:34523206 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTGAGCAGT TAAAAGCAAG
  CCTGTTCCTC CAGAGAACCC CGAGGTCTCT TTTTCTTTGT ATGTGGCTTG TTGTTGTTTG
  AATTCATGGT CTCTCTGTGT TATCCCAGCT GGCCTCGAAA TCAACAGGTA GACTAGGTTG
  GCCTGAAGTT CACAACTATC CTCCTGCCTC TTAAGACCAG ATTGCAGTTT CAAATGCTCA
  Y
  ATATCAGGCA GCTAACAGCT GTCCTCTTTA GGGACCAGCA CATACTGACA CAAACATATA
  TAAATTAAAA AAAATTTTTT TTTCTAAAAA TAAGGACAGG TAAATATTGA GATACACATC
  TTTAATCCCA GTGCTCTAGA GGCAGAACCA GGTGGGTCTC TGTGAGTCCA AGGCCAACCT
  GGTCTATATA GTGAATTCCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	WSB/EiJ
ss51237334	NES14284691	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	C	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	WSB/EiJ
rs37561180					SNP	T	T	T	T	T	T	T	T	T	T	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51237334	NES14284691	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:34523206 () rs orientation: forward

Symbol	Name	Function Class
4930568A12Rik	RIKEN cDNA 4930568A12 gene	within coordinates
Cpgi120	CpG island 120	1447 bp proximal
Gm32566	predicted gene, 32566	222 bp upstream
Rr409035	regulatory region 409035	1537 bp distal
Rr409036	regulatory region 409036	1279 bp distal
Rr409037	regulatory region 409037	224 bp proximal
Rr409038	regulatory region 409038	325 bp proximal
Rr409039	regulatory region 409039	1111 bp proximal
Rr409040	regulatory region 409040	1798 bp proximal
Tssr36	transcription start site region 36	1187 bp upstream
Tssr11221	transcription start site region 11221	1799 bp downstream
Tssr11222	transcription start site region 11222	1823 bp downstream